Scaffold Ga0079957_1013782

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1013782
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5940
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F043359	Metagenome / Metatranscriptome	156	Y
F074795	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101378212	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSDCDFLGNGCYAEQTEKMYPNVRPAGMQNVITEKHRIRAMILDAIRQGKSIRWHERGDWFLNGELDTNYVENVTWACESILADGNSLPDMWFYTHIYDSRLVAFEKYMAVYASIHDANDKAEAVTAGFKLFAWCDSDQKIAPKRPKRKAAADAWRAALPKLVVIDGEKYITCPEIRRGRGVVTCTETKGSVACEMCPRGLANVLFPSH*
Ga0079957_10137825	F074795	GGAG	VTKEEAIVKILKVLKSPMMVMNKHNRDEALTLAEKYGITATELIEAWTDIALRI*
Ga0079957_10137827	F043359	GGAG	MEWNNSHKNPPKVGQKVYYFGHNIGIGIGHYSYKEHTLYPDSEDPIQLCPHLFENVHWGLVDACDAPFWLPYDEERAKSWCPIIPKKYTKDLYDDENFE*
Ga0079957_10137829	F006543	AGGA	MKKFSFAVDIVADDLDRDGVIESLRSCLSDNLPSDVHANVKAGEIKAFSEQGYKVWRARVTGVTAEQAGDAHSGKVEAEAVA*