Scaffold Ga0079957_1012344

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1012344
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6354
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030090	Metagenome	186	Y
F033036	Metagenome	178	N
F050317	Metagenome	145	N
F072276	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10123441	F050317	N/A	MQKEKFYIIAAGGYLPKPIVEEFTVDEADMDAEFDDFEEFKNYNIWEGVAEYEQKFAKAIVLTEAQAKEISVYLTKED*
Ga0079957_101234410	F030090	GAG	MEDPRATQLKAQYNQVVMSVARNTYLKAQELIRDLNEAKIRDEDKNEIRLHLIKMVTTKPTDVK*
Ga0079957_101234414	F072276	N/A	MSRTLIEASTKKRFATKFTVLENFKPMDESVLVFKDSEDSPNFLVVRYYRNEEGKMVQRGTLEEVNEEVFKKEHAPHANWDNTTLREYDKKFQDWRSSTIMEKLEQAEDDEL*
Ga0079957_101234422	F033036	N/A	MSYELEELQGLMNDLSTIGLSRKSLVFKTHYGFGEDLKGVNDGKTPLYITKEGADLMQEAGFGKWIKDVTFAIIWSNWENQPKERSWTQFPLPAADLVRPGLLRVGLFQSSPRMHFPGELSPARVKTAYDVLTDQILAIRFEEE*