NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1011584

Scaffold Ga0079957_1011584


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1011584 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6590
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003714Metagenome / Metatranscriptome472Y
F010765Metagenome / Metatranscriptome299Y
F014261Metagenome264Y
F019449Metagenome / Metatranscriptome229Y
F042864Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101158410F042864N/AMSTPTKPKAELVSDKAMTELLKRKVVDFRAAANLKDKDGCVKGLGAYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGSHSRPKVTILCWHLA*
Ga0079957_101158411F003714N/AMPNANHPYVETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAACKTQADAAEALGTTVGTLRSWLDITQTEWVNVKVRGPYKRHA*
Ga0079957_101158413F000957N/AMSSFKHLDGMVALLSELYEINERIMTGDICSAKSAIASDRMKKLLHHYHEALHEDGATKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV*
Ga0079957_10115846F019449N/AVSIETFTTIVVPGIASLAYFSAGVANLYARNYALATMWLCYSVANVCLLSTVFRK*
Ga0079957_10115847F010765N/AMSAALPQPPSPEEIPVSIRDLGFGILIGSASWLVRYFCSTERHSLGYIARRTATAGLTSLLVGLGTKGYFSSEGLAFAAAGCAGYASPELVDLLLARIKAMRGKTPPKG*
Ga0079957_10115848F014261N/AMKTLIALTALIILGWTAVVTFAGPDLYRAINGPEPVKAKAVRSHR*
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