Scaffold Ga0079957_1011044

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1011044
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6784
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10110442	F028717	AGGA	MDQKSNFVGNDTATGVAQGQATDDSNEQNVNPGAIRKSTTQSLLNALSNASGTQFTSVEEALAFMARVGAQNTSGGSAQPVVETKPQQTSGRITANDLHEQFQRLQQDLQTKEQKLREKELDSDIQRAMGDRFDPDLLDYALSKVKSNIQWNNDGTYSIINQKGQERYGSDGNPLTIQGLVSEVAQGNPKLLKQSQLNSGSGLRPGMGSFTGALDETVPDYSRDPAAFNAWAAKNGLGKNIGLKAMGVTATVSNTSRKVL*
Ga0079957_10110443	F011761	AGGAG	MAYVLGGPNNEADGFTTAISNFALRAMHESTGLVNMTNVVTPTQGNQFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITASPAVAQTAFDIFYGWTTSFQLAATLGAELGESFAEKVDQRVTNAFLSFKATPSNTNYTATPADGFSRVLELGAMELVADGDSPAGATAGFTANSVLELIRLVKQNFKVARMPGAPVIVLDSNGDAATVTASVQTGSSLNRLLGELTGGAVSQSGGSNLSALGNELLATGRIESVYGCMVMFTTFLQTATRTVAGVTSESVLVGAYFGDSALFTVMKEGLSIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQQ*
Ga0079957_10110444	F002260	AGGA	MSVPYQRISNATVYDIAFYDPAAERRAEALHVNWDPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLVSSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNDVDLQNYNFAKERCDREWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYM*
Ga0079957_10110445	F058142	AGGAGG	MPQVNYSVPNEPYVYESEIIAVLKRDIPKQWNIPIYDDFPSDNEVVRYGVYVSDVHLDERNPHQLGIQYCASIYHAYDTFNIAYISYQDDPYNRAINAIIGNLVTAVKDDGEQLFNGYFERDFNQVRTYGPTSSEKHVWTFRLLRMEFNT*
Ga0079957_10110447	F003807	GGAGG	MTESQIWLKTNEEKLRSLIADEAKMIPMLDNMMATIKQLKAKQTFRLALLNQLLEDLDENK*
Ga0079957_10110448	F058146	AGGA	MKLSALSAKPQLIEVSINDEDTIKEFGEAITFHTWDRQPMDVFMKLANMQGNDTGNIIEVVKTLILDDKGKEILSKDMMLPTHVLMKAITKVTDLLGK*
Ga0079957_10110449	F040626	N/A	MSILMIDSLGKRYGLLPSEVLNRSNTFDLYIMDVALSFENYHHSKTMNNGREPVDNYTTDELQAMLNKVRKK*