Scaffold Ga0079957_1010900

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1010900
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6837
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013082	Metagenome	274	Y
F013525	Metagenome / Metatranscriptome	270	Y
F019968	Metagenome / Metatranscriptome	226	Y
F091614	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101090010	F013082	GGA	MSSIKTVQQEINRLLLESKTNRWIVSNEAPYYYDLCSVEDKTITLDKFYESFPYHNPDINCEYWQTQHNRWKAIWTQNKI*
Ga0079957_101090016	F019968	N/A	MANREIGVICSMSFNEMRLLVGCLTKILLDNEVKGINTKKRITNLIEKLNGMLTKQGFKK
Ga0079957_10109004	F013525	AGGA	MDNFAQRNPEEIKQELDTLSELMVEALYDFRRCEEFKKITFSQLTLTKKLENKCSVAEAEKWAYSSNEYKTIVEGLLVAEKKYTLAKSKYANMITFLDCYRSWLATQRELIK*
Ga0079957_10109009	F091614	GGA	MDTKQDIINKLASNLRYLRHNTQVEEPMTGKIKFMSQRHLAEFIGSGCEQQISKFELGTNQMSASQLYRIAKVFDISVDSMFEDLTKSDYKKVIKYDIYA*