Scaffold Ga0079957_1010185

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1010185
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7119
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054804	Metagenome / Metatranscriptome	139	N
F055822	Metagenome / Metatranscriptome	138	Y
F063745	Metagenome / Metatranscriptome	129	Y
F095369	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10101851	F063745	AGGA	MDQLIINSINLATKPNQQPQTPTKLSPRFKALARECGFVFWQNEPHGPGPGNIDWSSDYTQEFEKYSRELVTWTCELMRQDIIRDYLFRSSENTYKHLVVQD*
Ga0079957_101018510	F054804	AGGA	MKIIITTQVYNNYGTANDPYWKAKGAGDYVVQLPCDYTDEDVKRKVELAKSVIELHNTPMWFEKWLGYHVVEDSVLTDFESQQLEWDGKIDFPAEVLNV*
Ga0079957_101018518	F055822	GGAGG	VAGYTKEFLVDAYLWRFTKIPSIDIDQLLDLERIANKTYDTYGKDKFREYSSLDAEYLRNYRASIKR*
Ga0079957_10101855	F095369	AGGGGG	VAYYIRDGELVPVAIPLNQRVKIGRYYEPPQLNHIANDQLWIQDVYTFNQIPWYMIKNRFERYLLYAVLYGAIVVMLTMIGRYWLGAPN*