NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1009912

Scaffold Ga0079957_1009912


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1009912 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7256
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004696Metagenome427Y
F008359Metagenome / Metatranscriptome334Y
F008491Metagenome / Metatranscriptome332Y
F011762Metagenome / Metatranscriptome287N
F073457Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100991210F008491GGAMAKKISTKVNYQVTELVNNLNEAATTTSEQKRDFFTTKALYNAKRLSTFLNKAKVGAMAIAITFGMVACGSNASNEVKTDSTSATVVDSTSLVQPVDTLSTEVK*
Ga0079957_100991213F004696N/AMLGKHKGKTITMDYAIQKLKQDEVVLMKKIKSLQDGKPKWAASAQLDELRQAIKLLQRYNTINEAEVEHEDEILKEIFLINPAKAQA*
Ga0079957_10099124F073457N/AMSKFNLEFKESVKTGGNRLGNLIENPFRNFAASKMSNGRKTMCIVEFTDLFGKKHMIKCSNRKQMLDAQSFLGMFKSESSKVKNILAEYPISFGRIPKRFMSELRNELKQFGFSYQFINKLAGY*
Ga0079957_10099126F008359N/AMSKSKVNIKKNYEISKVRKVMKMKDNNFESATYEIYKVSGPRGIKKYFVSRKDAKAYVDKITDTKLTLDIVKDIMREIKMK*
Ga0079957_10099129F011762N/AMSKKVKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEDSVRKYVGELDVEIKADKLENSLLRNVVSKKAKKEVLASKELSALIPDLETLVPAMLRDNMAMRPEDTDK*
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