Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1009488 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7445 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007691 | Metagenome / Metatranscriptome | 346 | Y |
F009531 | Metagenome / Metatranscriptome | 316 | Y |
F022197 | Metagenome / Metatranscriptome | 215 | Y |
F023106 | Metagenome / Metatranscriptome | 211 | Y |
F040623 | Metagenome / Metatranscriptome | 161 | Y |
F068492 | Metagenome / Metatranscriptome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100948812 | F022197 | AGGA | MTLETETMEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMVDELSWDDAQWEIEENVFVPELGEWHTK* |
Ga0079957_100948814 | F068492 | GAGG | MINTQLDPRLQKLVDLGESGTDILHGELKNLMYEAEKEFLEAQRIEEDNDYSDAMESMERRYWEGQMDALSWVYALTYQLSFAISDRRKNA* |
Ga0079957_100948819 | F023106 | GGA | MRISRRITDEEKVANKLGNTISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAQNGF* |
Ga0079957_10094886 | F009531 | N/A | MTQQVAIYEMNYSCSPGGVDCWEATINGYGTSTTASDFKTAGQALNWVLDQYPDEMLELTVVSYPAYEKEFV* |
Ga0079957_10094887 | F007691 | AGAAGG | MNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVG* |
Ga0079957_10094889 | F040623 | GAGG | MKVRISLEQTIDIDDAMSNDIGFEMYGPGDMSNDDKVDYLIARFAEDIDTMVKYDEVLGNISVEYIED* |
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