Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1009224 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1009224 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7569
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7569

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F041650	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100922410	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKNIKVLMDLEIKI*
Ga0079957_100922411	F005528	AGGA	MRILTAILATLTSLTVSLGIAQAVSAPTHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPSLAKQAGWPDHAIPKLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCRELNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWKKCK
Ga0079957_10092243	F041650	N/A	MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYDTLVEIYDQIPHFTREQIDASQPDYWQARLGRQANLQIMSGGANWAHLEALDQVGVLQPMIQAQQDRAKELHQ*
Ga0079957_10092246	F020354	AGAAG	MFKKLKDELFALGFTLGASAITIMTLSGSLQNWALFFTFLSLALHLAGVLTKDGEDHGARSED*
Ga0079957_10092247	F003378	GGAG	MVPEVKIKQNPTIAKFLDLGQRLVSLFLANALPAITTGAVIGISVGKAAIMAGAMAVIKVVSALAEASVDGELDSEEIKQAFSGAKKK*
Ga0079957_10092249	F021759	AGAAGG	MDTGLATVLAAAVATFGGIIVALMQLKGFREENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1009224

Overview

Ecosystem & Geography

Associated Families

Sequences