Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1009172 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1009172 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7595
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7595

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003542	Metagenome / Metatranscriptome	480	Y
F009005	Metagenome / Metatranscriptome	324	Y
F009073	Metagenome / Metatranscriptome	323	Y
F048784	Metagenome	147	Y
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100917216	F003542	N/A	MSKVNFDYDLFSEKIGYDSVNKQYLIRVYEYLVSEINDNPAPTWTGIMRKMLGDNPNRCNPSSYYSSVRRCLKEIGVCTYDSSKRYFVKGPNWDRFVSSEDWSWFIMRTGSCEYSEIVK*
Ga0079957_100917217	F009005	N/A	MSEKEMIEYASSIGMDEELVSYAKQIQRQLGSEGDTADWLDCLEMAYNELILKEIYS*
Ga0079957_100917218	F093404	N/A	MGEQVADNRAPHSTCKLFENGDGEYYPVCQPMETLRLIRGEYHPIGSTLQYPTKWGRKKASLHLVGTKLRDARLELENLQTELAKLERCYSDVLLWEDDSKL*
Ga0079957_100917219	F000785	N/A	MRVTNKRLGMKFDCVRLLNWAEELLGPSKCTAIAFTWDGEEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQRFRWYNHYNLKLGYKKNPYEIQARENEKLVKRAYKKRK*
Ga0079957_10091724	F009073	N/A	MKNYQIILTSVLSFFVAITILNGTAQQYVHFAGELNEIGCAVIALTMGVLSLYALDWKGFFQYLIK*
Ga0079957_10091727	F048784	N/A	MNINTEKLVSVFSQDELSAMMTAVAGYVNTKRKQGRSTGVEVQAFNKIVDALLVSNYLNAVEVDRVPAGGRMGTAEYKMAEAMEMA*
Ga0079957_10091728	F001754	N/A	MSTISNPFKNFAASKLSNNPRFEVIVSYTDFMGKAHNIVCNSRPALKRASEFLKMFKTEAVAINKILGEYPVVMGKFPKKYHSEIKAELTANGFGTVTNFFNH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1009172

Overview

Ecosystem & Geography

Associated Families

Sequences