Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1008923 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7726
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039606	Metagenome / Metatranscriptome	163	Y
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N
F057330	Metagenome / Metatranscriptome	136	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

163

Metagenome / Metatranscriptome

162

Metagenome / Metatranscriptome

142

Metagenome / Metatranscriptome

136

Protein ID	Family	RBS	Sequence
Ga0079957_100892311	F057330	GAG	MRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRPEVYEFIEPAEISLETNPEPSA*
Ga0079957_10089232	F039606	AGGAG	MDKDRAIITQVAAKIASDLVNKEADTDTKLGEFTTLFTSVKDIMFEIIDGNQDAQIYEMAKSTFNATPVNNSATSESVGGVLQIVGKQHGDLPDWLIKACKRDGVTKVYDNRDGLSVNPKRPWFKAVDADKAYWAPKTR*
Ga0079957_10089236	F040004	GAGG	MKESRWDIPKPNFKKDLEFGKQGEDQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMVTEAEWWVYVYTMNQAMIVVSTERLKRYIEMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE*
Ga0079957_10089239	F052563	N/A	MSSKESQDWIYDIIPAKQVEEIESKAKSLQQNLDNGVNIVLSATNDSAIRLCRAYYDGTQGNLDAWLHIMGFLSALIDTIEEHLNEEGIDPYAK*

Protein ID

Family

RBS

Sequence

Ga0079957_100892311

GAG

MRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRPEVYEFIEPAEISLETNPEPSA*

Ga0079957_10089232

AGGAG

MDKDRAIITQVAAKIASDLVNKEADTDTKLGEFTTLFTSVKDIMFEIIDGNQDAQIYEMAKSTFNATPVNNSATSESVGGVLQIVGKQHGDLPDWLIKACKRDGVTKVYDNRDGLSVNPKRPWFKAVDADKAYWAPKTR*

Ga0079957_10089236

GAGG

MKESRWDIPKPNFKKDLEFGKQGEDQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMVTEAEWWVYVYTMNQAMIVVSTERLKRYIEMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE*

Ga0079957_10089239

N/A

MSSKESQDWIYDIIPAKQVEEIESKAKSLQQNLDNGVNIVLSATNDSAIRLCRAYYDGTQGNLDAWLHIMGFLSALIDTIEEHLNEEGIDPYAK*

NMPFamsDB