Scaffold Ga0079957_1007139

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1007139
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8818
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F037690	Metagenome / Metatranscriptome	167	N
F047645	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10071391	F037690	N/A	SYVYGVVIAELMSSGASVITISPSSWQAHIGNKNPTKFEKDRLRLENPGYADSWYKSKMREIRKQRTVDYFNKKYNLDIDDFDVADSFGIAYYANEVLTRR*
Ga0079957_10071395	F000369	N/A	MDIELADHFDRMNKVVEELLKGNNPTQIATLTGFKRAEVLGYIDEWKEVVKNDSGARERAKQAISGADQHYAMLIKEAWKTVEDADQSGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQEILVKILKEVTATCPKCKIEVAKRLSQITGIVEPVVIHDNKEAL*
Ga0079957_10071396	F047645	AGTAG	MIIKKHCRHVYEYVYSAVCPDCGRDTHEPNIELQSKLFKKYYESGEHLKWKCPIDGGTIRGWWSI*
Ga0079957_10071398	F000376	GGA	MSIYQEKAKECKCCGKHVPLPVRLKEYNGIKVCPTTFDNIMEYKRVWSEIGKRPPGNIRKHFSDYVQQIVEQSVDSNR*