Scaffold Ga0079957_1006799

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006799
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9079
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F033780	Metagenome	176	Y
F060870	Metagenome	132	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100679911	F003378	GGA	MNKAMTITKNVITKFLDLGQRLLSLFLASALPAITGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKK*
Ga0079957_100679912	F022860	AGGA	MKRILDYITENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSVLTLGTGKKDE*
Ga0079957_10067994	F033780	AGG	MVTPCDWSLVAVHWIDAFDSSNGWISIKEYKAKPQHVVSVGWLWPDLLEGYVSVTCSYCPDEDPEPETVGMVTHIPTGMVQKVVALGHPQFNT*
Ga0079957_10067998	F103171	AGGAGG	MSEQYTKMELKELAKFLRKVYPGVADQDSLWALIEKTEQLIKGKHGPGNKRR*
Ga0079957_10067999	F060870	N/A	MDANAALIVAAVVTAVGGILVAIIQQFKKENHTDHQVVIGLLHVLRKSQTRVEDKVDRVDERLTNHIESHLSGGMLDNERTIHQDGVEGTSKVSS*