Scaffold Ga0079957_1006697

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006697
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9167
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011394	Metagenome / Metatranscriptome	291	Y
F028150	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100669710	F002060	N/A	MDYLSVGIAIAAAMVSGMGTAIIAGIKENKKEKIRQAEREQDHLKLEIKDLKISLYKLERELTEWKDKYYSAIQELITVKSELEETLLKLSFIDHKIEDLQDLDPEF*
Ga0079957_100669711	F000671	GAGG	MDKILCYSCNKTKNKLNAKRSSLLPINLLMCETCMNAKFEPRWVVILAGRQNGMDFVKEFVVKKKYVGNDISASELII*
Ga0079957_100669713	F011394	AGGA	MSLENSKHFYDNRHFKHGINLWTGDPNKPVFYTKEMALKIRDIKKPVHDLQMDIVEYPDFLAIRLYENNFLQYGDGVRMKIIDYVEKVKKVIESYGVRCELEGKPGERILRRS*
Ga0079957_100669721	F028150	AGGAGG	MKWIKDRIIAILNENFTFLGFFVAWVVLEGSAKTVVGYLTLISVAIWFLSIGIRAKAEKEE*