Scaffold Ga0079957_1006660

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006660
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9194
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F023329	Metagenome / Metatranscriptome	210	N
F024101	Metagenome	207	Y
F031460	Metagenome / Metatranscriptome	182	Y
F033009	Metagenome / Metatranscriptome	178	Y
F063633	Metagenome	129	Y
F084152	Metagenome	112	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100666011	F063633	AGG	MSNTYKDRKVQHVQGLRRSGASGIHKNKQKDRQKRLSNARIWKEYLKDENE*
Ga0079957_100666017	F022399	AGGTGG	MKTKYQSIYSKNGLEVFVNPEDYWADYKVSLNGHHAKKFYGETAWMDVTRFVHDQAVEFWDFNTDGIHRQWQQDIMAELESRFANE*
Ga0079957_100666019	F084156	AGTAGG	MNDLCWYDTKQGDNCQWECSDIPGSFYCKNCDGLRVWNRFAQAYSFYVREGHYGF*
Ga0079957_100666022	F023329	GGAG	MVEETQDKDITELYKLFKYNIPNDEILSGKLKILVADLSWKMDLPTWTKEELDIMCSRMDALVEVSNLLYDIQWHRLNWERKTNG*
Ga0079957_100666023	F031460	AGGA	MAKVISEVELHLQMWSTVTLSAEEIQDIYPEFADMVDFDDTDELEQAIQDHMDMNYLDHIQYADGALDECKIDFVWEDDGSE*
Ga0079957_100666025	F084152	AGGAGG	MLTMDEYKVIDTVLVNYLEVGDLIKIKDEVFQVINLLDTPKGWDIVVLDNYEDTKTISVPDGSYLKIVMIEEFEV*
Ga0079957_10066604	F033009	AGGA	VSNSTQLWWAGETTQFGDMQKFYDVNLWTMESKDGKYASVILDGEMIKSFRCEGAWDLARKLAESHLLKREQLEQEGWVTD*
Ga0079957_10066608	F024101	GGGGG	VPKEKPIHKMVEEVFDKDITQDLIDELAEEKSFIVNTLKKFVEHDEIWVQLVDNIEARKAFLTNLQMLFLSDIENSTLIELATTKWGND*