Scaffold Ga0079957_1006172

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006172
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9625
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F014121	Metagenome / Metatranscriptome	265	Y
F019061	Metagenome / Metatranscriptome	232	Y
F030059	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100617213	F014121	GGAG	MMTDTAYQIWETFKAELIVEPTDDMKEALASSIRVISSLIERDGVLENEPWHLHIAQELNEISYDVEAL*
Ga0079957_10061722	F030059	N/A	MNTNIKDNLFQIQEVANKALEEHKNSTERWSGINYLDLRVVDVYVKYSIHYEDLEYGVLIEECSPTAYDLQDYMVEYLKENLPDYLRDFVDVWTAW*
Ga0079957_10061724	F019061	N/A	MTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNGGSRMNHLKGKTVRDAVITAMRAK*
Ga0079957_100617241	F000345	AGGA	VESGDHLDKQPNQLGKTLQEWWDSDSFKEMQKANEEAKQRAVGKYFMLSEPDKLDMVQAMCYIMCKAESEGTSHRGLQDALGIYPSGFWVDHLMEVHNALWSYYHDKKQEQELKDDLDALENFTDQQK*