Scaffold Ga0079957_1005676

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1005676
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10116
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015721	Metagenome	252	N
F030066	Metagenome	186	Y
F053266	Metagenome	141	N
F082618	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100567610	F015721	GAG	MTLTPHSDFEARFRASRPAEIVVATYLLNIGHTVTLPKRRIAKDFADRAEYADKGDIYASGKRIEVKHIKHDFGYQAWPFETAAICAKKSFDAADPRPDYYYIVNASMTVAALVDVATTFPDWVVRRITDKERGYDYDVYAVKPEYLGWRYIDFEERL*
Ga0079957_100567615	F053266	AGGAG	MPRKDTFHGFGTFYALGNKFEVRVEYTQDLDGGIILEAADLIGIFLDNDKVAASLNHDIKLDICDLGADAIFELEEIATNDALMNGPYGEDY*
Ga0079957_100567618	F030066	GGCGG	MGDEFTYFPTKQAQSEKPKPSHNLEHQFHSNQAMWNSAVQESPLNRLKFYDAQLARGVEVNRDRVAELIREAGAAAVLSDRDTIGLVRQLWGERAVEKLRARAKAGE*
Ga0079957_10056764	F082618	GGAGG	MVKDDVSPPGAWKEEMERAPWAFGQRQGDRLTNAFVAMRRMGLYEEATLLELEIKTLRNEIDFLLNR*