Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1005647 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1005647 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10139
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10139

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006467	Metagenome / Metatranscriptome	372	Y
F009524	Metagenome / Metatranscriptome	316	Y
F036677	Metagenome	169	N
F048273	Metagenome	148	N
F082379	Metagenome / Metatranscriptome	113	N
F093778	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100564711	F093778	AGGA	MDAELQALENALAACAVHGWQVTLLDQIDGVWTAQASDNIFAEPLATGTGATRTAALLALTAEVEAR*
Ga0079957_100564712	F048273	GGAGG	MTPRQIDQLIERLDSHSAKLDEVRSDLDRIKGGLVVGGALMFSVLVPIIAVLLSK*
Ga0079957_100564714	F006467	AGG	VIKRIIVDLVGGAWTILGLLFAVVVLPEGDTQSTMAALFGGLTLIWLITGPLRWMEE*
Ga0079957_10056474	F009524	GGTGG	MTDLTILDAIATRVEAATDPAGYTLRKCYATPPESLPITPCAVLFPGGDQITIGNGNRTTVLTVNIVIYLLPIPRMDEKYRDLYTWRAWLRTVFDGAVTISGNAAQVAVTGTTLGTDTYADQDYLTVQATAEVTVFDTVAFTA*
Ga0079957_10056476	F082379	AGGAGG	MDTVKITLEGEYAGWTAELRKQVSARILLDLESGEASRALAAFAKLVVTHNFKGLDGKPCQDVLDAPVDALSQTLEAWGKANQPDPK*
Ga0079957_10056477	F036677	AGG	MRAAIVVDGQFDRNFDQLRLGFLKGSNPSAFKRLASFATLNAARTLQKPMRDKAPRGATGNLRKKVLARKARFNNPAAVVGIKGGRKGVFYGYLVVGGQGQRRTTQNGTFVVKGVKARPFVDEVVKKQSNINRAVESYSKTVAAFFNDQPFRNTILKFKRGNQR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1005647

Overview

Ecosystem & Geography

Associated Families

Sequences