Scaffold Ga0079957_1005623

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1005623
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10162
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F011075	Metagenome / Metatranscriptome	295	Y
F027843	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100562314	F027843	N/A	MQIEMMNANGSLWVVKRKFKADSWFVQGLFSNKFTAQEVCEAYHVEKLLRGPDDTHYLVNEIPEAEIVID*
Ga0079957_100562319	F007751	N/A	MNIVTIIAPNTQSADLKSVIGKDVSQNQSPTCRARLVSVGKTNCIFESVPSPYDKFPKPEFVGVRYKVPNWIAWNSFFY*
Ga0079957_10056233	F010084	N/A	MIEVTKEVIQHLKDNIKTQIGVSNIDGVGVFAIKDIKKDEQVFPIWQGKTGIYVIPNNELNEIPSEVLKLLEKYFINDECGFKIIRLFNGMNFLFHGTSFCNSAYPSKENTNIDINGIALRNIMAGEEILEWYTENINLEN*
Ga0079957_10056235	F011075	N/A	MFETNLGIIVGSHLNDAMIEVSINPQLAKKRMKFVKAITFFNEDLTKGVTDDYCDWLWNELFENQKWGGPYVSGTDYSKFK*
Ga0079957_10056239	F002303	N/A	MEKRVITDPETGEQKIIEVMDIREQCRERAIEFAKEWNFENVSDHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADSECRNNIFLLTMCKANCYV*