Scaffold Ga0079957_1005131

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1005131
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10717
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (56.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100513118	F073458	N/A	MSAKLIALASEIVDTNPAGAQLIVNLTNAETGAELIEALDNYDSTVLENHTQPVDSEDDGYVSLTDADGTVTYI*
Ga0079957_100513119	F053990	AGGAGG	MIDTCILHDDYEDFAQKFLGIDYDDFVTFQLGLPDEDELEIEYPVIA*
Ga0079957_100513141	F007265	AGTAGG	MISPYTVVPGTAIVHSITDVYELCDEVEGITYRVELQADNGGVCMKYNEKAHEDTSKGFTEDMSIGNKELAIVVAKRILELYQVN*
Ga0079957_10051315	F081258	N/A	MTFTFPRLSAGIYEVQKDSNTVGFIRKATASKWIVADVVDTPQHVAKTLKDAKDACINLIIFDVVDKTSEDVYNDSVEVDKVNPELNKVLEGSLHCYKQVPGTDKFEEVSPSTLGFGSEPTLEPIEF*
Ga0079957_10051316	F013631	AGGA	LVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKNTSMVMSEPRCYADTLNWVRSFCASFCILPEYC*