Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1004398 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1004398 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11692
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (27.03%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11692

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (27.03%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010897	Metagenome / Metatranscriptome	297	Y
F014486	Metagenome / Metatranscriptome	262	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100439811	F014486	N/A	MNIEKLLNENLETFFPWSDNDDPPLDSNKTFLQKEKEIDEFFEGWRASM*
Ga0079957_100439819	F022820	N/A	MKHENRISKILEKRVLKDEDPKLIAQIDKYLAELEVVFVKWAKAHPNWKESEE*
Ga0079957_100439824	F007359	N/A	MQLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYTMNSLSDKLGQKFRGSKGGLKAVVMNRVQNTIKSIPVESFVRTAQIQDFYSIGEVSAEKLDTDS*
Ga0079957_100439830	F035200	GGA	MKSLWRLRMTSKFIVLRDGVRVSDDMHESEAQAEKEANFWREIIKRWPDGTKVTIKKIGG
Ga0079957_100439832	F020860	N/A	MEITKAKKLKEGGYALYAIDPKTKTETQVGYVGENLVLEAWIPKGVKIENS*
Ga0079957_100439835	F010897	GAG	MKLINTTSYCSDKLKEIIKWCLPQGLHLKDIRKIDFGNTKIGWHGRAWSGSMRAHIALPKYSKYIKPYISGGERGYLPLKTYSWEESLIDLVSHELRHIWQYKNTKWQGDGLGVIKKKKKFFHGIKKIRKYNMGTRANLSEVDATLYAIRKVREYRRSNLKFSLT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1004398

Overview

Ecosystem & Geography

Associated Families

Sequences