Scaffold Ga0079957_1004292

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1004292
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11879
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020352	Metagenome	224	Y
F031496	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100429217	F031496	AGG	LGSQAKEVEKGSPLVMANPSGRKGAAFEIGVLKWLRSKNVVAERLRLSGKNDEGDIVAFIAGKSYVLELKNRKAISLPAFWDEAVIEAKNFAKARGLEQIPPAFVIVKRRNASIERAFVIQDLESWLGERQ*
Ga0079957_10042925	F009529	AGGAG	LQFEAGFYLEPSRTGSGAVSAERSIGINVNALDFSMATDLLAILHGWEGIIRRDRQLTPPALVKREATTDLEVLATCEFHIAHLSWTLIQPWAIDFAGEVWGLHARGRAAAKKFKEQARRIPCPTDDCNRFVVIDVEQMSQDVSCFGCKQSWSVLRLVALAMSNPNRRFFLDVEAIAAWLQMTQREVYRLVKKFDIEKRGSTFDLQAIMKARQQNA*
Ga0079957_10042926	F020352	GGAGG	VISSDFKPINCRKCGALVWHGISWAGFEKKLDTPVLTIEEEIVKRINQGMSFECHKTRVSFEAVERSLPRIKFGKRPDSVILGEHVCSSSRLFQFEPPNYWATQGYVERPF*