Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1004149 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1004149 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12125
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (22.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12125

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (22.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F027818	Metagenome	193	Y
F087065	Metagenome	110	Y
F105075	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100414914	F087065	N/A	MQKQSTKNWRYDWRQRVGVRPTESNSELFHSYVEIANQLLEEYSSADFVYSEVRQVCQPQYLFQVVLDMRSEKLSMVIRNTEEGLRLLSIQKA*
Ga0079957_100414915	F001806	N/A	MDAGTRQKRVEALEKIKDKALSMAQEGRDSLEVRDFVISAKKELAYELPDEDAFSKAMNATLAYKRQKGN*
Ga0079957_100414918	F002721	GAG	MAKDSRLDLGRYIQNPFNRRGQIPKRLNFDDLFRAKPETGDYPWNPSRFDSTDLLKRSMTRKVTLNPDLNFVGNSPFFDGNKDVTPDYELFEGLGRFNRPMDYDFNEGRARTQQRPQEQPDFNPQWMEAYKISPTLNPGKMAKNPMPRLRNPDPNGYLMAMAENRAENEVEDKPSIAQLLDRQGLIKAQQKTAEEKQGETTANDNEVDTNVSPGKTVDE*
Ga0079957_10041498	F027818	N/A	MFTNTIIGNIAHMETAVYDGREFLAIKLYIKDSDNNTCVVKFNNSNGLLTAYTNGILKTGHQLILTQWEVRINSIRTHYTKDDELVALKYPEVALTRVRVVMGASPLPKAVVESTPTPTLEEVPF*
Ga0079957_10041499	F105075	N/A	MMIYQPSGEHKYRVVWYGGESTQLHFEKQVCRDDWRTMATSTLQYSFPTGVKELLLEMEDYYHHGLVLEEEYRHSMTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1004149

Overview

Ecosystem & Geography

Associated Families

Sequences