 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005805 Open in IMG/M |
| Scaffold ID | Ga0079957_1004124 Open in IMG/M |
| Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12168 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wichita, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016117 | Metagenome / Metatranscriptome | 249 | N |
| F021046 | Metagenome / Metatranscriptome | 220 | N |
| F024248 | Metagenome / Metatranscriptome | 206 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079957_10041245 | F021046 | N/A | METNFVTNVHEVVYAGFLAKDCPANEVRILSKFYKVSFVVFKAGNVSYNAVMAANTIITDFFVSNHRLFAREMALEFVENVLTLLFSYDGFWDFVNRLNIHFFYLSYRSQILQVLNYHLSSTFGNERFLQVYRRLPPYVFGAEDYSQERGEKFSQFAKNEHS* |
| Ga0079957_10041247 | F024248 | N/A | MSLIFEINDNQLCSILKSSYPPFSVEYGSFPRVPIGLFCCGRGHQYPPAQVVPTSTSSLSPRPLQSVDPALIARSFALPLIQSMYQISAVRPPLLRQDALRPSSPEVQVVPPNDLDVQADEDDRVISPRPSTSAAAANDSLSLW* |
| Ga0079957_10041248 | F016117 | N/A | MDSIHIELSPRLGLLIAAWKNFFTRLHAQSILTDNGLQYLLALLVDRLQEAIDSEFYPLVLDWLRETLPKVLNCRGTVGLINQVPAHLWTSDHIFRHNYFVCLERRANRLSIPS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |