Scaffold Ga0079957_1004112

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1004112
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12182
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F001971	Metagenome / Metatranscriptome	609	Y
F023809	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100411213	F000345	GGA	MNEEEANTQLNNALQKWWDSDACKELQKKNEEAKQRAIGKYFMLSEEDKLDMVQAICHIMCKTESEGTSHRGLQDALGIYPVGFWVDHLMDVHNALWTYYHDQKKEKELKSDLDALDKFLE*
Ga0079957_100411216	F023809	N/A	MYTIQLLAPFVAGLCFDNFMTKQGELCNFRQEPPSVVKYYEPGTSCYKNGIFYEKCENSPEVKY*
Ga0079957_10041124	F001971	GAG	MTYEEFVNKSPEHYMDMVRLIDIKQKYRMKLTEEEKKINEYILEFQQQTKLNELRDKFEKCLEIDPET*