Scaffold Ga0079957_1003818

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003818
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12688
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F046342	Metagenome	151	Y
F053147	Metagenome	141	N
F073274	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100381810	F073274	GGCGG	MIMLKQVNEFLASMPHDVMNDYAPPAIWLDTDSGTYGDAKRLVVIDVSQWSDDDEQVWHDMTDSERSGYGIDYLEALRSYGYTPELKPPATPSEYMREIGR*
Ga0079957_100381816	F053147	AGGGGG	MSASFYKLKDDSWGVRIKEFAGEPNMEVEVTTKAGDTKTVILGKRVAKFDDAELWSLAPAGTVNVSKTKPAAKPAPVKLEDEEPF*
Ga0079957_100381823	F046342	N/A	MSCPWSLVSVHWIDAYDSDNGWIEIETYKPEACHVVSVGFLWPDCLPGYISITGSYMPDEVPNLKTIGMVTHIPVSMVQNVKVLDQPKIDLTLQHPTRML*
Ga0079957_100381833	F016388	AGGA	MNSAIAKTLDLAQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTAEEISAAFGTPKKKAK*