Scaffold Ga0079957_1003779

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003779
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12775
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100377913	F102853	GAG	MKELVLVYYAAIVVATVGFLAFFVPEPRRPTPAECGVAEIAPDMSVRDREVCRQLRQHRHRM*
Ga0079957_100377914	F044373	AGGAG	MLRDGHFIREEPPKIGAHYIPQFYQRPSTPEERFVQDIMLGSKPQQESPMTVFFGRLLSI
Ga0079957_100377915	F037206	AGGCGG	MKCMQCGSKTHVVNTIQQLGGVRRQRRCPSCKNNAYSAEVWVAGNVMVEKSIYTNSEVALIKKKVVDVRRANEDRRNDDAT*