Scaffold Ga0079957_1003646

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003646
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13031
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100364610	F057213	GAG	MIDNELAGNDTAPDAEQVTNDADTNVKAGAIRKSTTSSILNALSQASGQQFESVEAALAYVARTSSQRGGNAQPVEVDESDSRMGREDRATDNTDLRDQFMKLQRDLASKERALRTKELDSEILRNMGEKFDPDLQEYALQKIKSNIKMNRDGSFTIVNQKGQERYGMDGNPLTLNGLVNEIAQGNPKLLKSSSSQTGSGLRMGQTQFAGAQPDAIPDYAKDPAAFNAWAARNGLGKGIGLKNAKVGVSVSAMSKKVL*
Ga0079957_100364611	F026558	GGA	MNSQELIKKNPIYNATYEQMLAYQYGYLGGYIFKTYVRKKRPSEDSNLYLDLVQNTIAQPICRYVVDTINDVLFEPGIKRDLKFCTPDGTYLDPSNIEWSQLFLLDADLQNRSLNAFMESVGDLTSIFGHCWVFVDMAQQGDANFGRPYVVAINPIQVWDWEWEWFGGKPMVKYVKVLETEDKDDWYVKCYHLGTPESPSYWVSYKVGKNLSKNEVTETGRGEYPPGMALPAFIAYGRRDPRSIDFGISDIDAPVDAQREHYKLECEAYTAIQFAHTIIRADKGVSIPVHAGSIVRATQGQVETISVDTGDVDKIIKKQADILEQVEALTGLGGLRNSKNQIASGIAIIEERKQLHRLAKSKARLMEITEELIFTFAARFMNMRWAGEVHYNTDYEAHDTNYRLALFQQAKTLVQNNPIIDSLIAKDIIAMLAPAEAIAQYEQAYIETVADPMVKELMTQENEQTLSRDLGDQIPTPEDFGENEAIYGDATEFDSGIDGAGVDDAGIGTPVTYTGQSFYTQQAVSAQLVGMNTGR*
Ga0079957_10036465	F003807	AGG	MNTNSNAFLITTEEKLRSLIADEAKLLPMLNSMEQTIRQMKAKQAFRIALLNQLLEEHYDKYSGN*
Ga0079957_10036468	F002260	AGGA	MSVPYQRISNATVQDIIFYDPAAERRAAQMQVNWDDYFKVGSQEILYQMEFGWWPKYCDTVLGATYYTNLPNGALISSFNPSLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDKVNFDHALRRYQAEWEKALQLMNWYDLNQDAPNGPTTKLEENWTADADYFNNDRRYF*
Ga0079957_10036469	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYNPNTGAANAGFGNAPAAFEQNPALGQGSITATPAVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFLSFKATPTNSLYSPTPADGFARPTELGAMELLYAGLPSNTAGWTTGFTSASVLELIRNVKQNYKVARLPGTPIIVLDSNGDTQGGNVAGQDGSTMNRLLAELTGGAVNNPTYGGGSQVSNLGNELLATGRLDNVYGCKVAFTTFLPSATRPVLGQGSNSNVLVGAYFHETALITVLKEGLQIKMGEKPGGLQMWLTGVAYMGAGVADPRRGGAINIYQS*