Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1003626 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1003626 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13061
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (77.08%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13061

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (77.08%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025021	Metagenome / Metatranscriptome	203	Y
F034546	Metagenome / Metatranscriptome	174	Y
F045622	Metagenome / Metatranscriptome	152	Y
F057945	Metagenome	135	Y
F074392	Metagenome / Metatranscriptome	119	Y
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100362614	F057945	N/A	MTEYKWERFGEKYYYYDVATGKIVGAVSKIALQEVWISLVYIGEYSFTVQDEKHLGQYISLDYAKNATQRFWDIQNRTLLE*
Ga0079957_100362624	F025021	AGGAG	MAEVRLNTPLYKVTMTEYERGYGQRPMGERFFDSEIDAKAFCVEYNRDPGDPDCYYRASYTRVA*
Ga0079957_100362630	F095154	AGGAG	MYTAGDRKFKRLATAIEYAKKEFVRTGVVLGIEPVVVLNKTPGYVAYLAKGMKL*
Ga0079957_100362632	F034546	AGGA	MLPVAQFTDKDVAEATQGMGATVLKPRKIKRPVCSAKTSKGFVKGTSGFAMGYPRKTFV*
Ga0079957_100362639	F057945	N/A	MREYKWERYSEKYYYYDSLTGKIVGSVSKIALQEVWIALVYTGEYSFTIQDEKHLGQYINLDSAKRATEFFWARESRTLLE*
Ga0079957_100362647	F074392	AGGAG	MNQELLTELALQTGGSFFVDVFKTHQERYALQLLSEIYHVFSKQQFDGYAIDFWDDIVEHFQLDNTEIEKLSKRNS*
Ga0079957_10036265	F045622	AGG	VKQLLEMLPRILSAMPEIVKYIKYIPILMLLAGIGFAVYYGAQRYKDPYLCYNNQLYAQKSIDSNVYIFVGDVCVSGNENEIQPITSEN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1003626

Overview

Ecosystem & Geography

Associated Families

Sequences