Scaffold Ga0079957_1003574

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003574
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13221
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F012971	Metagenome	275	Y
F016392	Metagenome	247	Y
F028742	Metagenome	190	Y
F041091	Metagenome	160	N
F054004	Metagenome	140	N
F097250	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10035741	F054004	AGGAG	MMTFSEVFGRIALIVALLMGINHVLTPSPQSQSIQVISKKKSLLKACVRLHKRKAKNYATVCEKRGIYV*
Ga0079957_100357411	F012971	AGGAG	MIDLERDKWMALQDMNSEDVADAICDSQAIVEAIQSNAWADVADMIRSRVELKAERLAQLDNDLPLTPWVDSIEELELWRYYRMELQREAIEQNKPKLPKINPYHSEASNEN*
Ga0079957_100357412	F097250	AGGAG	MSITVRSALSLATQQINVVMTRFLSYFQIWTPTLSLKERQRLLRKAARRVKEQPKTQRVVMPSKLITDPTFGYVNSALTNVQDTWKKHSTGVNNAGLFNNPNEDRKNDKEARGQLSAQKIRRVQ*
Ga0079957_100357415	F028742	AGGAG	MSNKPTIKLTERTSSGLCDALFEEFDLLRNGLSDSHRASAVAKLAVQIINTKKLEIEAATFHKAGLRFVPLALTAKGISIGKN*
Ga0079957_10035742	F041091	GAGG	MSEWKTQQQVYDELRNDILEEVAVEIEKMKCFGNDTLSSFAIFIRGMKR*
Ga0079957_100357424	F005703	N/A	VDVVPVRKPLGEEVMGWIAACVLIALLLPLMAFLYLDILETKNEAKTQVEKVEKLRRQVEQKDREKEK*
Ga0079957_10035748	F016392	GAGG	MKTAFDYKGQSSVWLTDAKMKRFKQGEEYAKRKQDKRGIHEQNQVFIYSKALSGKK*