Scaffold Ga0079957_1003508

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003508
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13374
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (51.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022190	Metagenome / Metatranscriptome	215	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100350810	F003805	N/A	MRPIEHTPESCFHKAAQDKWLVDLFNKRDYRGLLEAALVLNTLHQMEKTKAAWAIREAADNLTGQFDIKHNSD*
Ga0079957_100350811	F043896	GGAG	MSRLELAAWARQTWGEVIVDQNRVDLLEKLYEWDGRSDPEHPHHHTYTGLYLKYTEN*
Ga0079957_100350812	F017122	N/A	MEVIPFQQQLDPELRLGEGRSRTSAEKTALFELKVWLPGQGAMRDLVRAESLQQALLFAQNRYPNCKVEVPTQAAKKPKLVRSSNGPKESARRRLKLMESKNEQA*
Ga0079957_100350813	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGLTAAKEDASSWVTYERAVAAARAVAECTNSTVAVHSIDEPAYPKSWK*
Ga0079957_100350815	F004722	GAG	MSLPRTGRELVMEWLMREVRQAKTADLHRAAAFLEWARGIRKGCTKQRSSARAAQSNAWRKGVDEDVRWRV*
Ga0079957_100350828	F009141	N/A	MTENSMVPFYRSYLLNGRTVYLDKLSELSDTELHMLNIDTMAALKEARHEYENIENKQSEEAGPAYRRLKVAGYFQAAIKLELESH*
Ga0079957_100350829	F014614	N/A	MNYDAHEDYYRKSRGYNWHDMHELRQQPRRTSTEVPDVFKHMFSDRAAYDAWVDERRKLYFG*
Ga0079957_100350830	F022190	AGGAGG	VKVLHIEELRFEGDYLVVDALVDDAVLVYPQTQLDPPEWGPALCRGTLYFSDEDLIPATDAELRVLLTERVDDWAPIDTSDWYN*
Ga0079957_10035085	F002317	N/A	MDHHEEALITAKPPDNPFNQAVPALLTAAVIGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLSDLETRVRQIEMTVSRQNK*
Ga0079957_10035086	F002867	N/A	MNVVNTTDFGNGYTLDQLENERGELYYRACLNSVCRYAEDHYIAMMYLEGMGWDPTANS*