Scaffold Ga0079957_1003155

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003155
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14153
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (31.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100315519	F082582	N/A	MTVDFSKDVMLGMLRKGQTGTQILNILDVIVPQEVVEMTREYVCDQLGIADCPENDDEIEAYLAAV*
Ga0079957_100315520	F084145	N/A	MFLSCPVSHDLIDAEWYQDVDNAKEDALDWSVELSGETVFVYQAVEGEDGDYEFKKLYSVSA*
Ga0079957_100315524	F058096	N/A	MMTELSIGECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYLEIDNHRNILFESDFEIASIFTALAKDECDEEPEPDDVEAIIDLILEYKNNRTEIVKFALSNQVI*
Ga0079957_100315525	F015080	N/A	MMFDLLKFEPHNIPNAIAARHKFENDWEISVVAGPGLYGRIDEETYEVGIFRPNGNLTEDVSGWNTKHEVSAMMWVLSQL*
Ga0079957_10031553	F061794	N/A	MPFTKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVEKGKHLLKKYINNLG*
Ga0079957_10031557	F027828	GGA	MMAPTTETMLDTVLTMEEILTEKQLLALRDILYFYKEFELELYDYPSEDTLFTKTQRELFDIFDIK*