Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1003138 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1003138 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14194
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (10.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

14194

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (10.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F019476	Metagenome / Metatranscriptome	229	N
F024047	Metagenome / Metatranscriptome	207	N
F078623	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100313810	F019476	N/A	MNNNKTKTAKIVLEIEWEAVDDSDLPSLWDWKRIKIPMDLTKVKYLGIHTSNGPENVSNWMGN*
Ga0079957_100313811	F024047	GGA	MTIVQTKDIIEWVKTAVEKKMIKELNIPNAKVYLSCDRPNPDVILETKNADGDLQIVRFLII*
Ga0079957_100313814	F009135	N/A	MSNPKYYLKINLPPNFNDIDAEVIKKDLMTYMISRNQWGALYGPKSSKKGITIEKVSYRTNED*
Ga0079957_100313815	F013524	N/A	MKTKQIVDNLREFTQKNCNTTLDPKLCEDIRYLCDEVERFSKEIVKANNHMDEDHITIQRYKNKLSKYESF*
Ga0079957_100313816	F008688	N/A	MNRFNKIIVGGLSAILLTAMTVEPPKLKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKESHNYSVEERELTE*
Ga0079957_100313817	F007859	GAG	MKNLLIIALLSTGCTSGMYLRYSYNKALETLPPCSRVHTINNRYITYSMIENSTNSVYVVKTNYYRAYYNCDGKIINTTKN*
Ga0079957_100313818	F010081	N/A	MKEQVDAIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRSSNYHLNNFTADDKKGHCC*
Ga0079957_10031382	F006018	N/A	MKKYTIKVNDNGMCMSVGCDFYQTCTNNSVNMFYKTKHKFEPVLDEGVCLSYSSGKNTKTYQDNCYPNLLKKIYVN*
Ga0079957_100313824	F078623	N/A	MRDTIIIHNIHDKASREFVAAYGNRNDVTVLEDDGLNVRLAFPYISAFPTVVIPTPSYENTDENGTVTQIEGSIEYLRAPADWNEVQQRIDYWENKVPNWKQTDNRYQQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1003138

Overview

Ecosystem & Geography

Associated Families

Sequences