Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1003138 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14194 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (10.71%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006018 | Metagenome / Metatranscriptome | 383 | Y |
F007859 | Metagenome / Metatranscriptome | 343 | Y |
F008688 | Metagenome / Metatranscriptome | 329 | N |
F009135 | Metagenome / Metatranscriptome | 322 | Y |
F010081 | Metagenome / Metatranscriptome | 308 | Y |
F013524 | Metagenome / Metatranscriptome | 270 | Y |
F019476 | Metagenome / Metatranscriptome | 229 | N |
F024047 | Metagenome / Metatranscriptome | 207 | N |
F078623 | Metagenome / Metatranscriptome | 116 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100313810 | F019476 | N/A | MNNNKTKTAKIVLEIEWEAVDDSDLPSLWDWKRIKIPMDLTKVKYLGIHTSNGPENVSNWMGN* |
Ga0079957_100313811 | F024047 | GGA | MTIVQTKDIIEWVKTAVEKKMIKELNIPNAKVYLSCDRPNPDVILETKNADGDLQIVRFLII* |
Ga0079957_100313814 | F009135 | N/A | MSNPKYYLKINLPPNFNDIDAEVIKKDLMTYMISRNQWGALYGPKSSKKGITIEKVSYRTNED* |
Ga0079957_100313815 | F013524 | N/A | MKTKQIVDNLREFTQKNCNTTLDPKLCEDIRYLCDEVERFSKEIVKANNHMDEDHITIQRYKNKLSKYESF* |
Ga0079957_100313816 | F008688 | N/A | MNRFNKIIVGGLSAILLTAMTVEPPKLKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKESHNYSVEERELTE* |
Ga0079957_100313817 | F007859 | GAG | MKNLLIIALLSTGCTSGMYLRYSYNKALETLPPCSRVHTINNRYITYSMIENSTNSVYVVKTNYYRAYYNCDGKIINTTKN* |
Ga0079957_100313818 | F010081 | N/A | MKEQVDAIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRSSNYHLNNFTADDKKGHCC* |
Ga0079957_10031382 | F006018 | N/A | MKKYTIKVNDNGMCMSVGCDFYQTCTNNSVNMFYKTKHKFEPVLDEGVCLSYSSGKNTKTYQDNCYPNLLKKIYVN* |
Ga0079957_100313824 | F078623 | N/A | MRDTIIIHNIHDKASREFVAAYGNRNDVTVLEDDGLNVRLAFPYISAFPTVVIPTPSYENTDENGTVTQIEGSIEYLRAPADWNEVQQRIDYWENKVPNWKQTDNRYQQ* |
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