Scaffold Ga0079957_1003106

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003106
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14265
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005503	Metagenome / Metatranscriptome	398	Y
F012454	Metagenome	280	N
F016643	Metagenome	245	Y
F088885	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100310610	F016643	N/A	MTIFNPVWRVKIGGIQYTNYVLANLSITTGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVSVELQDSTATFVPIFGGTVVDFGIGIVASGVVGINQSVKITALGALARLPKALTDGVLNQDFDGNQILTILTDLLVNSWNEVPAALSWATYDPTIQWQDAENTGLGEIDTPGSYELTSRSSSTIDVYSLVSALATSGLGYIYENAQGQISYASADHRSIHLAANGYTDVSAAQAIANSLFVQTRAGDIRNEIVLKYGNNSASEVTDSDAASILSFGKLAQVITTTVKHQVDAENQAAFYLTLRSYPQANFNQITFELTNPEIDDIDRDALIGIFMGLPLRITDLPLNMAAGTYLGFVEGWTWRASYNSVSVTAIISPLAFSLQAMQWQDVSALEAWNTISGSLTWADALVVA*
Ga0079957_100310615	F002433	N/A	MSVGEWTAVGGLVIAVLTAVYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEARLDQLMLEIAKSK*
Ga0079957_100310616	F005503	GGAG	MTSSEIGLAVLMAIACILWAIVSYTVGYKEGHKEGYQRGKAVGRHISSQAVK*
Ga0079957_100310617	F001897	AGGCGG	MAFMDSYEGNKQRTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAYRNQLETEPAGVDYAFGYREAYPEKMRRWMIEDTCTSALMRVMALVLGGTEKATQEVMAQVNDKAPKAMDYDYWSTKFGDVPSYQTREEAEQAEPIAWEIPEPKATVPDAAPSCSHGSMRWNQSKPDAPKSWAGYFCSEKIKEKQCKPQWYVLTSDGTFKPQV*
Ga0079957_100310618	F000403	AGG	MSDYMEIINPQTRIAKLYFEGKVIEEYRVEQCDKCSKLMKFDQFGYQKGYGNENVIWFCGGCR*
Ga0079957_100310619	F012454	N/A	MAESMAAELVVAKRLGYEYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRHDRDIAVLVTGHSPKLHIIGWMPVAVAKKPRYKNTSQNNWTIPQTNLQPIETLARSNYAHPVI*
Ga0079957_100310620	F003182	AGGAG	MHILLFDCAICQKLYGKPKQRFGLKKGAELTEHEWFAQCMGCGTFGIKIVDDARIAELSQ
Ga0079957_10031068	F088885	AGGAGG	MATKSSRDTGTFSFTVEPLELRNLFRLLSALPKEVQDQVRTEAGSMSKRLAGQLMQFGLVSPTPQAKLVMDSITTPRDRLIRVDIGGTKKVGRKYGGKTGKGGKRTNQSQAAAGTLLWGSEYGSHPGVDRAGRKYTNRFKAVANPSGYWITPAVDFYTPVVAKEYIAMVQTLIRANGLE*