NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1003009

Scaffold Ga0079957_1003009


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1003009 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14508
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001279Metagenome732Y
F013413Metagenome271N
F024785Metagenome204Y
F032279Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100300916F024785N/AMDVWITRAVRHSDKSLWNNGSWVVRDVRGKPGTISNHAKGVAVDLSYRWQSEKNRGRQNGRKVSLAYMIKLLENADTLGIQLVIDYALNRSWKCDRGTWIGGKFESGDWWHVEVDPVMCNSSELAKQAWDKVFGVIPAVIKNPV*
Ga0079957_100300917F032279GAGGMPFIIKTIIAFALSAIGLGVYHVPQPRPDMASTAPTSAPYEALGGFGQYIADTYRYVPPVTTTLAPEPVYKHGDCSWLPKVALQAGWQVDQLKQLRQIALRESGCCPNRAGGDRVDQNCNVTGVAEWSHRSDSGLMQINGVHWLPTHAQYDGLICKQMQICTQEPLLDALTNLKAARLLYDRAGWSPWSICHRDNTCK*
Ga0079957_100300918F013413AGGMTENEYNETFDMRMEREHQETLARMREFQIIGEQISKMPVTSTRTLEIEVRYLMGIISELEAQVKNLESETRRLEQLVHRVTN*
Ga0079957_10030099F001279AGGMPVSTTIQVVGVKDTINALRKIDPQLQKDFKAQATQIAEPAISAGRAVYTQVPLSGMAYNWTSNGRKVFPFTVSKAVKGVRMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANKLSANLEPVTAGRTRLIGPAVYRARKKIEREMQSMILDTIREVQKDI*
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