Scaffold Ga0079957_1002907

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002907
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14802
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032634	Metagenome / Metatranscriptome	179	N
F093875	Metagenome	106	Y
F101033	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10029072	F101033	N/A	MEANFWLVLGVQTIAFGLGAIRLYTDMKIKLREHDLRLKTLEKKEDETAVQFKEIMQALNEIKLELKDKADKL*
Ga0079957_10029073	F093875	N/A	MIPEVNLKSIKIGDTYVLPLEFYSDECEETPINVSGYTFKLMAKNSAGVTEFTWNNADFVSIATNKRTVTLSSVTTTAYNAGDFQYELQVTTPDGVFTWMQGYINVSTQITS*
Ga0079957_10029079	F032634	N/A	MTYRDLFVLIENIKLNIGNQETKGQKKLFKIYEKLKPSIDEFQAKIDDARLDNAAVDEKGNLILNDKGEYNFNKEGLKKLKADIKKIEESEFEFKKIEVANPGGLEPYFFLKDWVNGVELQEAPKQEEEEL*