Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1002892 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1002892 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14839
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (72.73%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14839

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (72.73%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F009397	Metagenome / Metatranscriptome	318	Y
F010749	Metagenome / Metatranscriptome	299	Y
F011368	Metagenome	291	Y
F020159	Metagenome / Metatranscriptome	225	Y
F047018	Metagenome / Metatranscriptome	150	Y
F057139	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100289214	F011368	N/A	MNHPLQHRDIAGSHLSPGDHCLVTEHNRLILARVVEVYDTSNQVKLQPLRSDAGGRRSAPNQRTIRRECYNVYRIADQEITMSILRGAV*
Ga0079957_100289221	F047018	AGGAG	MLKLIGFVAVVYIGWITGIIQTILLVTAGLLTTVAGA*
Ga0079957_100289232	F002052	AGGAG	MPRTYKFQFEVICASEGTADETLVESMIDLAMQDLVYDDEFIVALGEKESVTIRVSKLAK
Ga0079957_100289233	F057139	GAG	MNIVKLNRNYNGYHYFSHRVEFYGGPQVRIKQWIRVRNWLWTQFGPSAEQALARADNFDGIQPVWAWDSEKSAVYLKEEALVLFQLRKEFWEDAKNL*
Ga0079957_100289236	F010749	GGAGG	MKKFTFWRNAIVAETYIVEAKDEEEAREMLRDGQVEVFSEEWMDWATDDFELEFTEEIDPLYRMVKDYKSVDKLSN*
Ga0079957_100289243	F020159	AGGAG	MMELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKHRNDPKPNFEDKESV*
Ga0079957_10028927	F009397	N/A	MSKYLLPMARNTVTGQTVKTQDLNGLRYTLQQRVLAESAADQCAAKMTARTGDQWQGFVREYTPRERT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1002892

Overview

Ecosystem & Geography

Associated Families

Sequences