Scaffold Ga0079957_1002841

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002841
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14977
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (87.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F074556	Metagenome	119	Y
F100701	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10028413	F074556	AGG	MQTRNTEEDQEITQFDDDAVVIYPHIEENIPIPKNVREALPDLSNQEEIEMLANTVKLISDLTGQQIEATQEDIDEAKTVIKTMIKEPQTKLQIKKYKNGTLASLAGMVAELDAQVVDDLKDLKTFVINGLIKEATMSDKSKERITALRAIGEVDGVDAFKKHTEVVHKNMSMDDIEDRLKTLVTKLQKRLEEKNVEGEIVNNGE*
Ga0079957_100284130	F012016	AGGAG	MKDPYAWAIEEFNSRGELVWSSIMQTRPKELSWIRDLPTKKHNIVITPLYKCEEKAEKITGIKSYKESTQRMIDANGGL*
Ga0079957_100284131	F006587	GGAGG	MMDKEYKGTGFILVGLIVGCCITWGVMKYNNTQTKYKMNLKCIQGELYEEVRTNMFVKSHLQCFEQRTF*
Ga0079957_10028417	F100701	AGGAG	MDTLSKAVSKALNMKQVGYNQASFSDSIKGIARSVYEGFPNFDVEVSDEVKADLYEGYQLRVAENQPKLKQHFVIESGNYLPVEKLAFDSHKGEKYIRTVENIMSYTPQAFGALKHSNPQLHSILKEPRDAVSKYCSNTLNALKKAVREIKNEGKPRERGATLSFAQTVKETLDGLKKKCANAKARVDETADEKKLVLAISEFNRKWLAK*