Scaffold Ga0079957_1002796

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002796
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15101
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005452	Metagenome / Metatranscriptome	400	N
F009883	Metagenome / Metatranscriptome	311	Y
F010982	Metagenome	296	N
F012452	Metagenome	280	Y
F014089	Metagenome / Metatranscriptome	266	Y
F047681	Metagenome	149	N
F053256	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100279610	F001731	N/A	MSIFNPVWRVTIAGVEYQTAILANLTITSGRTNIYEQAQAGYTNIELINLDQSNVLIGINDSLTIELQDSTATFIPIFGGSIVEVGISVAELGNVAYAQRVRIIALGALARLPKALTDGVLNQDFDGNQILTILQDLLLNSWAEVPGALEWATYDPTETWADAQNVGLGEIDTPGNYELAQRSSDRTDIYSLVAALATSGLGYIYEDGQGRISYADSTHRIDYLNANGYVNLSANDAQGAGLTIQQRAGDVRNQITLKYNTSSANEVSATDAISIALFGQLAQIITTTVKHTSAAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDADRDSLINVFMGMPVAIADLPLNMSAGNYLGFVEGWTFQAAYNQLSISLNLSPLAYSTQAVQWQNVDVAEAWNTISGILDWEHALIVA*
Ga0079957_100279613	F053256	AGG	MTEAELTPKQARQLEVDTYKANIANYRTLLATLDGDWDADLAHLKGIEAQEAARQCPEDKLLRLAVLQQFDQVTNLLKTEIVECAKAEAILGIL*
Ga0079957_100279616	F002433	N/A	MSIGEWTAVGGLVIAILTAIYSSMKVIVRSIMSELQPNSGSSLKDQVSRIEERLNELILEMAMKK*
Ga0079957_100279617	F009883	GGAG	MNELSIVIFMVIAGALWAVMAYSVGYKEGQRVGFTRGRAVSRHISSSEKAAN*
Ga0079957_100279618	F012452	AGGCGG	MGFLDNYEGNKERTDRWIARFPFGRLEAHIIEFNAEKGYVLIQAKAWRNQEEVEPAGIDYAYGYLAAFNANMKRWMIEDTSTSALMRVMALVMGGAEKATKETMQQVESMSKKVATADPAQDYDYWTTKFGDVPSFKSETELSDAEKAQTIGGAIEEVTAQLGGEMLKEAPQCQHGHRVWREGVSAKNGKAWGNYSCVERKPNQCDPVWYVFTSDGTWKPQL*
Ga0079957_100279619	F014089	N/A	MEAAIMSDFIEIIYPQSMTAKMLQNGEVIAEYKVEQCDKCSKLVKFDEFGYQKGYGGEKIMWFCSDCR*
Ga0079957_100279620	F010982	GGA	MVRLSREDEVVAHTAGLARESRYGSNPKFQGNKGNFHNAVVIHSEAAGAEIAVARYFGIEDFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIITEDDRDTDIAVLVVGESPTLYIMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0079957_100279621	F003182	AGGA	MPILEFDCSICKKLYGKAKQRHGIRKTAELSLHEWFSTCLGCGVMGIKIVDDAKVEGLSL
Ga0079957_10027964	F047681	AGAAGG	MPQIVTAAELRQILGVSVSLYSNEYLEQMIESAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGIYDATVTVTDDRIAPMVFTSATGQADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDQFQPSPFVLGRSLTNRIVGLLGPFLEVETLCL*
Ga0079957_10027965	F005452	N/A	MTIEADIRTPLQNALSTIAANVYNGIPEAMTSPSICLIPDSPYLESTLINGATTKVKINMLITGVVGYSSNAAALTNLEDLMISIISTMPAGYVVGDVSSPQPLEVGAGKFLTSDLQVSTYYTD*