Scaffold Ga0079957_1002690

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002690
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15439
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F003768	Metagenome	469	Y
F020354	Metagenome	224	Y
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100269019	F033428	AGAAGG	MSRIEGSLVDDSVVIILKARFAKLDDKSRLVIREIADEAHGSITMNPPTERRIGIARILLEIAENDGHVDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWSSFQDIYNNRVQLEYIPVSNHYIIKEYNHVR*
Ga0079957_100269022	F041769	AGGAG	MTHDIDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLTAAIRETDAAKAQIHVLNATVERLRLHIAQGVEL*
Ga0079957_100269023	F085645	AGGAG	VTKGAEILSEAHDLVTGPRQQAYSHPFDDYWKVSQLFYAFTGIKVSVKQAVMFMICVKLARIGTNDTNGRWHRDSVIDAAGYLACLSMVHEHIEDMHNDAVSRFKDDA*
Ga0079957_100269024	F028157	AGGA	MSIADPKFATVLADSDGHSRWVAHTDATDVMAAYRQGGVHLLVTLDPEGNITVAFKPGRHWEATWSPPITLERR*
Ga0079957_100269026	F051124	N/A	MTKRTDPIEQYLNNTGSGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKAKIAKAWMEREADLDDDE*
Ga0079957_10026905	F003768	AGGA	MARFAKIEDGTVTQVIVVSNDDAPTEAAGQAFIASIGLDGEWVQTSYNNNPVGEPPASRGKYAGIGDTWTGTEFVSPIAIPTE*
Ga0079957_10026907	F020354	GGA	MFKKIGQEVLALGFTLGASAITIMTLSGPIQNWALFFTFLSLALHLAGTATQGDGDDN*
Ga0079957_10026908	F003378	GGAG	MTTDMGIKQNATIARFLDLGQRLFSLFLARALPAVTGGAVIGVSVSKAAILAGAMAVLEVVQKLASASTDGELTSDEIKEAFSNGKK*