Scaffold Ga0079957_1002654

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002654
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15556
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010161	Metagenome	307	N
F016812	Metagenome	244	Y
F034183	Metagenome	175	Y
F043402	Metagenome	156	Y
F072286	Metagenome	121	N
F093841	Metagenome	106	Y
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100265412	F105155	GGA	LKIKYIKQLATEIRYLPWDYVTYNFYYKRHKGLDFYKRNISLNYWQYTVSNDITSCTFKMYEKEAKNAKLGNE*
Ga0079957_100265415	F002406	N/A	MENLKWISAMSERLRDELSSEYDDETKDLIIRAFRNGLFQNPSIVEELKSSSLIESDYFEDEDEIE*
Ga0079957_100265416	F093841	N/A	MADGFYVYKVDDGYSVTDQYGYIIKTAKTLKTCDSYVQKQLETRRAAERYAIEKINEEHTRNRGI*
Ga0079957_100265420	F072286	N/A	MEAKFKYYVTERHGYVQTTIAHLRKLKISKLISPYSRRLGTKVFIEEDGDLRLFCKRLEHNGTEVILEEDYTKPQQYFDNMFNHKDDECQDEQFDAFKSDWSLRFECIFSKADNIKHVRDGIFETKDGKQIKIYPTVYVDGKPLKADQAKKLGFEPISIVTGDLEKYYD*
Ga0079957_10026543	F010161	GAGG	MTKKNKMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVNDFIPVMRQIQFSLDLLAT*
Ga0079957_10026547	F043402	GAG	MREKFLQLADSLNENESDNIITLLKDLLEAWEDDKINLHTSIQDFELSTIYKVLNLFTDERKDTELSIDSE*
Ga0079957_10026548	F034183	N/A	MKEKIQNLASTLNENEAALLFQLLLKSFETANYQKVEYQNKDLIGEQFLMVNVELDLKNVPADVIESLLERLK*
Ga0079957_10026549	F016812	GAG	MNTLYPELILEEDEAMFSSNLFKLYKLDERCGKLEAPSFRILFLKDKKTQVHVSNHFNSPNCIISYYNIKDKTCIDARTISKKLYNKIAGHYFEAKKNSY*