Scaffold Ga0079957_1002232

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002232
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17132
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (56.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008878	Metagenome / Metatranscriptome	326	Y
F010026	Metagenome / Metatranscriptome	309	Y
F073280	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100223210	F008878	N/A	MDRISDYIALAVALHSVALIIVNLTPTPKDNEALDTYSRIAVKAYRAIEILAGVVSPLVKR*
Ga0079957_100223221	F073280	GGAG	MTDHLTSRAKCLIDEFEEGQSIRHGIANVLLHLAVTWDNYGDGDEYWHGVTVDTIEELAAELTAPTLLDRALGGDKDAARQFLREAGFTDEFGQLRPPYKSEDLNDD*
Ga0079957_10022325	F010026	GGAG	MAVRAKTGTARVEHQPGKPKTTRQGQGQHSKPSHGRKKLRGQGR*