Scaffold Ga0079957_1002101

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002101
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17703
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012672	Metagenome / Metatranscriptome	278	N
F039597	Metagenome / Metatranscriptome	163	Y
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F075866	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10021011	F066704	N/A	VEFWKKEAYIIAEKVTGGNPIYRDLVSHIYLLVYDIDIPAKDLPRLFARYAYNQYNWRDSQFNKQYRLNDPLPELDNKEADQEYHETEMQLFLDSYMEKSPDDDQELFTKEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLFITYNHSNRDCQSSPEFQSPGLQAI*
Ga0079957_100210120	F039597	N/A	MTLGYNDRTCTNGKGGIKSVLLFPLGNVSASTIADNEITALTVTGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVALVEKADGTVVALGFGEG
Ga0079957_10021014	F065712	N/A	MQAHISESLAGLDKGLIEKFNLTPYQVATWDTVFMGMYREEDLTTLATHLGASTIVWFGSDAKDLPDDWAKFVQDSVNIAVSHQVLETLASKGIEAIWCPINAVIPHHWPLVPNGDKIFWYSGNAPEYYGQELINEIKERINIPIIRAGHDTFTKEQLVDVYSQCFLNLRLTPHDGCPNTNIEMGLMGKRSIYNGDLPASIPWQSVDDICQSIMREYSTRHVDNVYISNIYHNFVNYERMSTLFI*
Ga0079957_10021016	F012672	N/A	MAYSDEFIKHLEELAHLYIEECLNHKKEMISNKGDIVLVLDRHIPTIDYFLRIWIPIVRKDKTIHRDTYYTWLNSDDKLKSDTIKKIDDLFKGLAIDIVGNEGKGIFYAKNRLGMHDRQQLETKNVEKFDFE*
Ga0079957_10021018	F057881	GAG	MKQLEIKLPTAISDCTPEQMTRWLMMADAMKDNKDDITQFLIFQCQLLSLFSGESINKIKRADVDSIQDASTHMLKLLTSYQYQEPKEYITIEGQEYRLEKNFGHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRTLNPNDKRYNIFKEHFPGDEFLNFFSFFLDLSEKRRLAILGIQMARQRMEMMKVEQDLKIQSGLIGQLSYIDYPKRWESVWTKLHNSLM*
Ga0079957_10021019	F075866	N/A	MADFDFLEDFGISASEAEQPKNVYDKFIIELSNKLAEEFRNYTKKVAQNTGALAASIIPVPTGKLSFRLDADDYFPFVDQGVNAVGTNNYASQFSFRYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLRPKKITQNVINNDVLNRIALDLAEVTGLMFEITFDKNTETWR*