NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1001921

Scaffold Ga0079957_1001921


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1001921 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18684
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (90.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F017469Metagenome / Metatranscriptome240Y
F024719Metagenome / Metatranscriptome204Y
F026822Metagenome196Y
F036551Metagenome169Y
F042747Metagenome / Metatranscriptome157Y
F048091Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100192110F006618AGGAGMSKIKQHLENEVVITHSSEENTGWKRYIAFNYQGNEYELTLFWEEFNGYDTYWRVPDRTPDWVAEWDSEAHKGMSFEHYLDDLTWEMNK*
Ga0079957_100192112F042747AGGAGMLGYKYEDIQGFGSTLKLAELMAIDMGEAEVREGLLKIWDFFEGLLAEGYVEGEEIEV*
Ga0079957_100192115F048091GGGGGMIEHHFIIKYSKEGGWEWDTDTEEDRYPDGTVWNEEAQEWTNGYIGWNKEKDEGEYLDDDDLVGEQLGAILEIANSASKVI*
Ga0079957_10019212F024719GGAGGMSNVIELPNRGKITVIFYEVSDSQGIAIWGGENPTQALKWYRNSPAGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMGRWGNG*
Ga0079957_10019214F026822AGGTGGVSEPRYLEGDDYALNGVELDIVKCKECASEYDYAEYHSYTCSDCEDKMIARERERV*
Ga0079957_10019215F017469GGAMKTICQFCGWEITKPEWYNGYDGSYACDDCLMDQAVEREKEREGAR*
Ga0079957_10019216F036551AGGAGMNEALEVLLNDEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVSKRGEV*
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