Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1001856 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1001856 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19063
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (24.24%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19063

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (24.24%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009604	Metagenome / Metatranscriptome	315	Y
F010317	Metagenome / Metatranscriptome	305	Y
F014838	Metagenome / Metatranscriptome	259	Y
F016369	Metagenome	247	Y
F020529	Metagenome / Metatranscriptome	223	Y
F038644	Metagenome / Metatranscriptome	165	Y
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100185615	F009604	GGA	MNKCGCGSDIHPERYALGYKVCLKCGDKNASRNKPYGYVHYGHKTAGSIVITSKKGFDNYSKVSYRMNKGSNMGYASRLTTSF*
Ga0079957_10018562	F038644	N/A	MRPVKIKDLPNGPWREYALEAQRRGIEILGADILNATDITLIGAIDMIRELTEKIEKKTE
Ga0079957_100185622	F041152	N/A	MNIVDYIVKNWDTLPKSKFDDDHIVIFKEIQNWDGGYGHHNYEGIGVDKDGNVTWCYSSGCSCSGGPSLDTKKDLKIFVVKEGIDLNVDPSTIDFYSLQVEFNTY*
Ga0079957_100185624	F020529	AGG	MFSNYNIWKYCAKYFFLSIAAAYVYNTAATFINQKSDVANLIGSALFAGLFIGSVLILKSDVTKLVKNLNENKEKKQNEE*
Ga0079957_100185626	F014838	GGAG	MKETLNKIKDLNEQLIDVKKQLVAEFKAELKKIFVDNPTLDSIEMYVNNHEFNDGDTTYFEIGYEDLKIVIDGDEVERDYDDNNSNPIIESLVHLFGEVQCIHEDLYGDEYEHIVIHRKKVLNY*
Ga0079957_10018563	F010317	AGAAG	MNKIYIEKLAEVSGGLPARSMEEYIDGQYQGDSHSIPVEYNLEGILSFPIKVGESVIVERTKRNGVEAFGMFSTSRVTEVGNNYFKTKNSVYSYKFL*
Ga0079957_10018567	F016369	GAG	MKRAFTLIELLLAIVIFLGILTAVIYNFDRFSDKVRYYEARDNLKTFLINLKYQSAFQQKEFELTFDENYNMYSSLSDIYQLDMFTNDLKVLETSSTRIVFFLDGSVQESYIVTSSLDGTITNTFIINVLGKVDIKNENSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1001856

Overview

Ecosystem & Geography

Associated Families

Sequences