Basic Information | |
---|---|
Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1001856 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 19063 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (24.24%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009604 | Metagenome / Metatranscriptome | 315 | Y |
F010317 | Metagenome / Metatranscriptome | 305 | Y |
F014838 | Metagenome / Metatranscriptome | 259 | Y |
F016369 | Metagenome | 247 | Y |
F020529 | Metagenome / Metatranscriptome | 223 | Y |
F038644 | Metagenome / Metatranscriptome | 165 | Y |
F041152 | Metagenome / Metatranscriptome | 160 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0079957_100185615 | F009604 | GGA | MNKCGCGSDIHPERYALGYKVCLKCGDKNASRNKPYGYVHYGHKTAGSIVITSKKGFDNYSKVSYRMNKGSNMGYASRLTTSF* |
Ga0079957_10018562 | F038644 | N/A | MRPVKIKDLPNGPWREYALEAQRRGIEILGADILNATDITLIGAIDMIRELTEKIEKKTE |
Ga0079957_100185622 | F041152 | N/A | MNIVDYIVKNWDTLPKSKFDDDHIVIFKEIQNWDGGYGHHNYEGIGVDKDGNVTWCYSSGCSCSGGPSLDTKKDLKIFVVKEGIDLNVDPSTIDFYSLQVEFNTY* |
Ga0079957_100185624 | F020529 | AGG | MFSNYNIWKYCAKYFFLSIAAAYVYNTAATFINQKSDVANLIGSALFAGLFIGSVLILKSDVTKLVKNLNENKEKKQNEE* |
Ga0079957_100185626 | F014838 | GGAG | MKETLNKIKDLNEQLIDVKKQLVAEFKAELKKIFVDNPTLDSIEMYVNNHEFNDGDTTYFEIGYEDLKIVIDGDEVERDYDDNNSNPIIESLVHLFGEVQCIHEDLYGDEYEHIVIHRKKVLNY* |
Ga0079957_10018563 | F010317 | AGAAG | MNKIYIEKLAEVSGGLPARSMEEYIDGQYQGDSHSIPVEYNLEGILSFPIKVGESVIVERTKRNGVEAFGMFSTSRVTEVGNNYFKTKNSVYSYKFL* |
Ga0079957_10018567 | F016369 | GAG | MKRAFTLIELLLAIVIFLGILTAVIYNFDRFSDKVRYYEARDNLKTFLINLKYQSAFQQKEFELTFDENYNMYSSLSDIYQLDMFTNDLKVLETSSTRIVFFLDGSVQESYIVTSSLDGTITNTFIINVLGKVDIKNENSN* |
⦗Top⦘ |