Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1001797 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1001797 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19309
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19309

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F058557	Metagenome / Metatranscriptome	135	Y
F078706	Metagenome	116	N
F086839	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100179710	F078706	N/A	MSKLGLALGKKYEDNRLSVLTRSFELGGHTFKVKVPSVSEVEAIYNYSKNPNLDEIEKAYQTLIEDIKNVEGIKEENNDIVIDGRSMKETAKNKHILQYRITAYIKFLIGENGETLDQITYEDIEAEFPLAIQLTLVEKINEVISPEYKEVRSK*
Ga0079957_100179711	F086839	AGG	MSVKFAVNGLKETLDAFAHLQNEIGDKDAKSKVLIPAVRDAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSKYVTSKDSVISLVSSRPIPKKLKQEFHVEFGNLKGSEYKKAKRKFYGEKGVVHDARAIANEFGTAKMSAKPFMRISLESQAQSVSALLGQILKAKIESYKPKQKI*
Ga0079957_100179716	F058557	AGGA	MAIKRYENVDVNDLTFGTNTYGDYTTTITKKFTTRPLVSDVKNSLAITERYRVYQDLIQFTFNYTPWLKDIVDNQDKYSITWRAKDWRITDAIESNDRMSVTLMCYRSDPTTRV*
Ga0079957_10017977	F000934	GAG	MSLNTILQISESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSKNRDLLSALRVADKATEQYLNFTNIGWLNYVAYQGDMTSGEITSCQWQTSSANKTLVLGSLPSISASAYIVKKGDFCQVGRYTYIATADVQRGGTSTVNIPVHRNLIDALVSTVGAVIGQYGTTISLGGTSYTGVTFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1001797

Overview

Ecosystem & Geography

Associated Families

Sequences