Scaffold Ga0079957_1001640

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001640
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20448
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006103	Metagenome / Metatranscriptome	381	Y
F023061	Metagenome	211	Y
F054667	Metagenome / Metatranscriptome	139	Y
F088531	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100164018	F054667	GGAGG	MVRQAQKVDQLRQPKGVLGEGSLRQQKEEDGRGWFSKITTIFKILGRPRLADQVGQEVVRDGREIPAQESNTSVKPKRVRSNNTSKAGGKSTGKTVRAPAQRNKSKSKTV*
Ga0079957_10016402	F023061	AGGAG	MDAADVLVQNLDKEVIAKRDWIASGQAKDFSDYQRMCGEIHGLLIARQEILDLKQKMENSDE*
Ga0079957_10016408	F006103	AGGA	MARTTFSGPVRAGYQGGDASAQQPLTPTTINSGTVISVDEGTAASGFYSRVMPTTGFGSSAYETPGEAFSVFGRVQCGAPFAVAPSTTFNHMAGAVGEFAVIGTYANFGLMAGVMGTINTNTLSGDAAVMAFMDGDSGVTTARCAFGVAMAQTTAGSGFEYGIDLKMQDPVADAGGPSGVIPYTKANIRMEDDVVVMVNTGAPVDGTTGDNFAGIGSMYIDSTAGNLYLQTGVITSPVWKLVTRAA*
Ga0079957_10016409	F088531	N/A	MLTHKDPEVQVMLGLLESQRDHVMGIVAMQAKQIEELKAKLATQQTDQEN*