Scaffold Ga0079957_1001372

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001372
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22603
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F099159	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100137213	F099159	AGAAG	MKKARIAGGITNSNARSHVADLYRNTASIKKKPNTKLGGREMDPTKIPGFKFGKGTE*
Ga0079957_100137215	F001706	AGG	MAYHWEHHPTYVEGCFGCKASTLQMNAGDAKRDVPDKKWNSELQAYRDARAQGMQPAGTTMRHIQEAHKASEVLGKPYNADTMPKAKQITKNVAEVLNKI*
Ga0079957_10013729	F001599	AGG	MAEETVSLVWCDNGMVDGKFAQGITDVLLKSGVKFETTLRSHGNQIARQREESINYWYDNNKSDWLFWVDSDVVVSPEIFLRLWNKKDSLTKPLLTGVYFTTNNPEEPLMIPMPTVFKFVDNGEGFGLERIHPLPKDAFIKVDAAGMGLVLMHRSVVEKIRKEIPDATLFQEMGTGKKFIGEDIFFFALCNQVEIPLWCDTGATAPHMKRFSFDEHYYNAMTKGR*