Scaffold Ga0079957_1000966

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000966
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26353
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (93.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005903	Metagenome / Metatranscriptome	386	Y
F016143	Metagenome	249	Y
F041723	Metagenome	159	Y
F058000	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100096610	F058000	AGGAG	MTEVQATIQALATVESLSNEIDTLAVLDKQVKDLTAKCKSLKDSIANTYGEGKHRGEKYGVRVTIENRKGSIDLEALCAHFGITAEQAEQFRGETVAVIKVAATA*
Ga0079957_100096636	F005903	GGA	MAITYDPRGMTWDQYCKLIEEQFASNQLGHVPEDRWRTWVDGLNGIGYFVQSGVPDHRNFATWQQWAESMCGIMSIQS*
Ga0079957_10009667	F041723	GAGG	MSEKKELSGLARQILGNSGAVTFFTQQEFDSALAVAKAEIMTVAIETSKKAIFIERQACSDLVRSLADQEDEGEIATALKNASEAILNRIPSQRPS*
Ga0079957_10009668	F016143	AGGAG	MNHGYVWTPAGTDITIRWRMLGWVPPSEQAEYQQKWKYFQELPMRRLDDHGKQKYEEALRRANVARIK*