Scaffold Ga0079957_1000755

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000755
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29484
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F013294	Metagenome / Metatranscriptome	272	N
F033725	Metagenome / Metatranscriptome	176	Y
F035679	Metagenome	171	Y
F061680	Metagenome / Metatranscriptome	131	Y
F092029	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100075510	F013294	N/A	MMAHSLESAFVHRLGGKCGTKILWYGMKKLLDRYINNHYHEVRAYTLYFLTKLGSRIEADTVINNSYLHVLTINEDAESEEQVKSYLLNTIKYQILWNTSLSHRDDRVTSMEYEPSDEADDEQDLQAKILEDKIYSTHKGMIEIYRSQISDNVHRIVFEAYIDKGYTTARSMAKYFDIPVTSAHYLITEIKQNLRNLQYRYESFSNN*
Ga0079957_10007552	F004366	N/A	MNSLQAIIDHIEQFYNNHLQVKKVGSDFKEQLFNFATKDEKYPIVFVVPVTVNPADNTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYFTYSNDYSFDVIGIPNFQPLNNDLLDYAAGYVMNITLTVNDWTDCAVPLSGN*
Ga0079957_100075524	F092029	N/A	MKYVKYYRMWLEDTVEPEGGTWCYMGMDEKGYLRQLNFAYQENEEPETLEQYLQWGYKIQEI*
Ga0079957_100075527	F061680	N/A	MQVTIGHSIAYFDFDDVHGKCEFEITDITDESYEVEISNVVATQVIGEVELDYILTDTELDQLNEEIMWCIQDTNLVRDMQDPMNYFDEDEWRYDA*
Ga0079957_100075530	F035679	N/A	LSLVSTIFATSCSAPKRAQWHYKKALKNGLKVVQDSDTIRITTVDSIPVILNDTIVYEKFYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTRVERIRGKTIYKTAKAQQVIKYKILWWPVIVAFIFGILLRFLIQKGLLDRIALLFKL*
Ga0079957_100075539	F033725	N/A	LFKNLTMITILNREIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSTERKEYPVVEELEIDGYIYKAQMKLTVRDTKMIEKVALRKEKGYISEMLAIMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYMMFIAQKIGQQANDQATEAVEPSNS*
Ga0079957_100075541	F001883	AGAAG	MARYANTGEFNVLYPTRRRMANILKRIIRNDVVDGEGTLVESIRINAKITGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDFVAQFTDELNAAGITAEIYSQYTEWLTKKYPLVQAVEVLENQQKIVYTFEAVDPPAGFTPGFPLDV*